PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044305.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 207aa    MW: 21710 Da    PI: 5.634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044305.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-172472355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  HL.SW.v1.0.G044305.1 24 YRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTPEMAAVAYDVAALALKG 72
                          9****888.8*********94....478***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-352386IPR001471AP2/ERF domain
PfamPF008471.2E-102372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-302382IPR001471AP2/ERF domain
PROSITE profilePS5103222.9192380IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-202482IPR016177DNA-binding domain
CDDcd000181.37E-302482No hitNo description
PRINTSPR003676.5E-112435IPR001471AP2/ERF domain
PRINTSPR003676.5E-116282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MHYSKQNSGS SSGTTTGSGF GRSYRGVRRR SSGKWVSEIR EPRKPNRIWL GTFPTPEMAA  60
VAYDVAALAL KGQDAELNFP NSAPSLPVPA SASPRDIQAA AASAAAAIGA AAAAMGAAAA  120
KDGGNSSGGI SCGNQYQGGQ DFLLEQERGV YNHEYVDEDL IFNMPNVLVN MAEGMLLSPP  180
RLDIAGDGDH DYYVGNAGDQ NLWKFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142180363ATERF1
3gcc_A1e-142180363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066511.13e-77PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-52ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A067L2P03e-77A0A067L2P0_JATCU; Uncharacterized protein
STRINGPOPTR_0016s02010.14e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-24ERF family protein